About

Computer scientist, working in biology.

I'm Enes, Senior Scientist at Johnson & Johnson Innovative Medicine. I lead machine learning and computational biology work in oncology and immunology. Before that: medical robotics, computer vision, neuroscience, and a PhD spent building open-source tools. I care about reproducibility and about analyses people can act on.

I studied computer science in Istanbul and Munich. My first research years were in a robotics lab, writing real-time computer-vision code for image-guided biopsy robots. After that came deep learning for pharmaceutical quality control and multi-omics work in computational neuroscience.

I moved to Berlin for a PhD in computational biology at the Max Delbrück Center, working on spatial transcriptomics and the algorithms that reconstruct tissue structure from single-cell data. Both tools I worked on are open source and still in use.

Now I lead multi-omics projects in drug discovery, mentor junior scientists, and work between computational, experimental, and clinical teams. I'm open to roles that lean more toward ML engineering or research leadership, in biology or elsewhere.

Education

Three chapters
  1. 2019 — 2026 (exp.)

    Ph.D. in Computational Biology

    Humboldt University of Berlin · Max Delbrück Center

    Thesis: Computational modelling and machine learning for spatial transcriptomics and cell–cell interactions. Focus: ML, bioinformatics, transcriptomics.

  2. 2016 — 2019

    M.Sc. in Computer Science

    Technical University of Munich

    Thesis: Analysis of activity-dependent proteomic changes associated with homeostatic scaling. DAAD MSc Scholarship. Focus: ML, AI, bioinformatics.

  3. 2012 — 2016

    B.Sc. in Computer Science

    Ozyegin University, Istanbul

    Thesis: A standalone application for a 2D ultrasound-guided medical robotic system. Focus: software development, medical robotics, computer vision.

Service

Community

2022 — 2023

Helmholtz Juniors — Member

Elected representative for ~8,000 PhD students across the Helmholtz Association. Contributed to the 2021 PhD survey analysis and per-center reports.

2020 — 2023

MDC PhD Representatives — Awareness team

Worked on improving contracts, salaries, and working conditions for doctoral students at the Max Delbrück Center.